PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03377.1.g00160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 142aa    MW: 15860.9 Da    PI: 9.2698
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03377.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.25.5e-33111312102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 
                                   Fl+k+y ++ed++++++isw+++g++fvv+ ++efa+++Lpk+Fkhsnf+SFvRQLn+Y  +   +++    +        
  Zmw_sc03377.1.g00160.1.am.mk  11 FLTKTYAMVEDPSTDDTISWNDRGKAFVVWRPDEFARDLLPKHFKHSNFSSFVRQLNTYVSSHPFSSSY---Tqpfvrldr 88 
                                   9**********************************************************5333222222...124567779 PP

                                   .............X..TTSEEEEESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 .............k..ekiweFkhksFkkgkkellekikrkks 102
                                                k   + weF+h+ F++g+k+ll  i+r+k 
  Zmw_sc03377.1.g00160.1.am.mk  89 dhelglccvqgfkKvvADRWEFAHDCFRRGEKHLLGGIQRRKG 131
                                   99998888877651669***********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-467129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.73E-317129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-367129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-3011129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-151134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-154961IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-156274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MASPAAGTPP FLTKTYAMVE DPSTDDTISW NDRGKAFVVW RPDEFARDLL PKHFKHSNFS  60
SFVRQLNTYV SSHPFSSSYT QPFVRLDRDH ELGLCCVQGF KKVVADRWEF AHDCFRRGEK  120
HLLGGIQRRK GTGAGAGAAA GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-22112911120Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691545.12e-63PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ7XRX37e-62HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLJ3M0I04e-62J3M0I0_ORYBR; Uncharacterized protein
STRINGOB04G29050.11e-61(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394